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rfng RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase [ Lates calcarifer (barramundi perch) ]

Gene ID: 108876800, updated on 10-Apr-2024

Summary

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Gene symbol
rfng
Gene description
RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
See related
EnsemblRapid:ENSLCAG00010017757
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Orthologs
human zebrafish all
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Genomic context

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See rfng in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) Unplaced Scaffold NW_026117727.1 (365429..379123)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017367116.1 (365413..379127)

NW_026117727.1Genomic Context describing neighboring genes Neighboring gene caveolae associated protein 1b Neighboring gene V-type proton ATPase 116 kDa subunit a 1-like Neighboring gene uncharacterized LOC108876802 Neighboring gene dicarbonyl/L-xylulose reductase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Small-scale transcriptomics reveals differences among gonadal stages in Asian seabass (Lates calcarifer). Ravi P, et al. Reprod Biol Endocrinol, 2014 Jan 9. PMID 24405829, Free PMC Article
  2. Immune transcriptome reveals the mincle C-type lectin receptor acts as a partial replacement for TLR4 in lipopolysaccharide-mediated inflammatory response in barramundi (Lates calcarifer). Zoccola E, et al. Mol Immunol, 2017 Mar. PMID 28095348

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in pattern specification process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of Notch signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,3-N-acetylglucosaminyltransferase radical fringe

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NW_026117727.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    365429..379123
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018666540.2 → XP_018522056.1  beta-1,3-N-acetylglucosaminyltransferase radical fringe

    UniProtKB/TrEMBL
    A0A4W6EKJ6, A0A4W6EL79
    Related
    ENSLCAP00010071235.1, ENSLCAT00010064318.1
Nucleotide Protein
Heading Accession and Version

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