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tefm transcription elongation factor, mitochondrial [ Lates calcarifer (barramundi perch) ]

Gene ID: 108875801, updated on 1-Aug-2024

Summary

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Gene symbol
tefm
Gene description
transcription elongation factor, mitochondrial
See related
EnsemblRapid:ENSLCAG00010030404
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Orthologs
human zebrafish all
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Genomic context

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See tefm in Genome Data Viewer
Location:
chromosome: LG5
Exon count:
5
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG5 NC_066837.1 (17507644..17510458, complement)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017367062.1 (1629652..1632746)

Linkage Group LG5 - NC_066837.1Genomic Context describing neighboring genes Neighboring gene SUZ12 polycomb repressive complex 2 subunit b Neighboring gene ATPase family AAA domain containing 5b Neighboring gene arf-GAP with dual PH domain-containing protein 2 Neighboring gene ras homolog family member T1 Neighboring gene rhomboid, veinlet-like 3 (Drosophila)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Immune transcriptome reveals the mincle C-type lectin receptor acts as a partial replacement for TLR4 in lipopolysaccharide-mediated inflammatory response in barramundi (Lates calcarifer). Zoccola E, et al. Mol Immunol, 2017 Mar. PMID 28095348
  2. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA polymerase processivity factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitochondrial transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription elongation by mitochondrial RNA polymerase IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrial nucleoid IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: transcription elongation factor, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066837.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    17507644..17510458 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018664938.2 → XP_018520454.1  LOW QUALITY PROTEIN: transcription elongation factor, mitochondrial

    UniProtKB/TrEMBL
    A0AAJ7PEB7
    Related
    ENSLCAP00010064532.1, ENSLCAT00010084708.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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