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hs6st1a heparan sulfate 6-O-sulfotransferase 1a [ Lates calcarifer (barramundi perch) ]

Gene ID: 108874857, updated on 10-Apr-2024

Summary

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Gene symbol
hs6st1a
Gene description
heparan sulfate 6-O-sulfotransferase 1a
See related
EnsemblRapid:ENSLCAG00010015864
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Orthologs
zebrafish all
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Genomic context

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See hs6st1a in Genome Data Viewer
Location:
chromosome: LG19
Exon count:
4
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG19 NC_066851.1 (16385677..16443481, complement)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017367001.1 (2168884..2226692)

Linkage Group LG19 - NC_066851.1Genomic Context describing neighboring genes Neighboring gene transformer-2 protein homolog alpha Neighboring gene transcription factor Sp3-like Neighboring gene UDP-glucose glycoprotein glucosyltransferase 1 Neighboring gene otolith matrix protein Neighboring gene activin A receptor, type 1 like Neighboring gene D-2-hydroxyglutarate dehydrogenase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Small-scale transcriptomics reveals differences among gonadal stages in Asian seabass (Lates calcarifer). Ravi P, et al. Reprod Biol Endocrinol, 2014 Jan 9. PMID 24405829, Free PMC Article
  2. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heparan sulfate 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, enzymatic modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan-sulfate 6-O-sulfotransferase 1-A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066851.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    16385677..16443481 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018663399.2 → XP_018518915.1  heparan-sulfate 6-O-sulfotransferase 1-A

    UniProtKB/TrEMBL
    A0A4W6E9F6, A0A4W6E9G1
    Related
    ENSLCAP00010063995.1, ENSLCAT00010071443.1
Nucleotide Protein
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