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palm1a paralemmin 1a [ Lates calcarifer (barramundi perch) ]

Gene ID: 108874172, updated on 14-Mar-2024

Summary

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Gene symbol
palm1a
Gene description
paralemmin 1a
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Also known as
palm
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) Unplaced Scaffold NW_026118158.1 (134179..141902, complement)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017363850.1 (134179..142660, complement)

NW_026118158.1Genomic Context describing neighboring genes Neighboring gene phospholipid phosphatase related 3b Neighboring gene mitotic spindle positioning Neighboring gene microtubule-associated protein 1B-like Neighboring gene tRNA methyltransferase 13 homolog Neighboring gene leucine rich repeat containing 39

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Immune transcriptome reveals the mincle C-type lectin receptor acts as a partial replacement for TLR4 in lipopolysaccharide-mediated inflammatory response in barramundi (Lates calcarifer). Zoccola E, et al. Mol Immunol, 2017 Mar. PMID 28095348
  2. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of cell shape IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: paralemmin 1a
Names
paralemmin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NW_026118158.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    134179..141902 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018662600.2 → XP_018518116.1  LOW QUALITY PROTEIN: paralemmin 1a

Nucleotide Protein
Heading Accession and Version

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