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wdr3 WD repeat domain 3 [ Lates calcarifer (barramundi perch) ]

Gene ID: 108872822, updated on 1-Aug-2024

Summary

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Gene symbol
wdr3
Gene description
WD repeat domain 3
See related
EnsemblRapid:ENSLCAG00010026629
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Orthologs
human zebrafish all
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Genomic context

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See wdr3 in Genome Data Viewer
Location:
chromosome: LG1
Exon count:
27
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG1 NC_066833.1 (4749150..4760986, complement)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017366512.1 (74191..86021, complement)

Linkage Group LG1 - NC_066833.1Genomic Context describing neighboring genes Neighboring gene T-box transcription factor 15 Neighboring gene zona pellucida-like domain-containing protein 1 Neighboring gene ganglioside induced differentiation associated protein 2 Neighboring gene uncharacterized LOC127142850

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Immune transcriptome reveals the mincle C-type lectin receptor acts as a partial replacement for TLR4 in lipopolysaccharide-mediated inflammatory response in barramundi (Lates calcarifer). Zoccola E, et al. Mol Immunol, 2017 Mar. PMID 28095348
  2. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables snoRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in maturation of SSU-rRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Pwp2p-containing subcomplex of 90S preribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of small-subunit processome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: WD repeat-containing protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066833.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    4749150..4760986 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018660706.2 → XP_018516222.1  LOW QUALITY PROTEIN: WD repeat-containing protein 3

    UniProtKB/TrEMBL
    A0A4W6G095, A0AAJ7LA56
    Related
    ENSLCAP00010057050.1, ENSLCAT00010058601.2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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