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LOC108863085 probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7 [ Raphanus sativus (radish) ]

Gene ID: 108863085, updated on 9-Nov-2023

Summary

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Gene symbol
LOC108863085
Gene description
probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7
Locus tag
Rs2_00744
Gene type
protein coding
RefSeq status
MODEL
Organism
Raphanus sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Genomic context

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See LOC108863085 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_06 current ASM80110v3 (GCF_000801105.2) 1 NC_079511.1 (3678199..3681544)
100 previous assembly Rs1.0 (GCF_000801105.1) Unplaced Scaffold NW_017353139.1 (2340155..2343498)

Chromosome 1 - NC_079511.1Genomic Context describing neighboring genes Neighboring gene acyl-coenzyme A oxidase 3, peroxisomal Neighboring gene delta-9 desaturase-like 5 protein Neighboring gene delta-9 desaturase-like 5 protein Neighboring gene uncharacterized LOC108842883 Neighboring gene ATP-dependent zinc metalloprotease FTSH 8, chloroplastic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo transcriptome analysis in radish (Raphanus sativus L.) and identification of critical genes involved in bolting and flowering. Nie S, et al. BMC Genomics, 2016 May 23. PMID 27216755, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trehalose metabolism in response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000801105.2-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM80110v3 Primary Assembly

Genomic

  1. NC_079511.1 Reference ASM80110v3 Primary Assembly

    Range
    3678199..3681544
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018637396.2 → XP_018492898.2  probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7

    UniProtKB/TrEMBL
    A0A6J0P7D2

  2. XM_057005534.1 → XP_056861514.1  probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7

    UniProtKB/TrEMBL
    A0A6J0P7D2

  3. XM_018637405.2 → XP_018492907.2  probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7

    UniProtKB/TrEMBL
    A0A6J0P7D2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases