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LOC108862728 probable beta-1,3-galactosyltransferase 8 [ Raphanus sativus (radish) ]

Gene ID: 108862728, updated on 9-Nov-2023

Summary

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Gene symbol
LOC108862728
Gene description
probable beta-1,3-galactosyltransferase 8
Locus tag
Rs2_21807
Gene type
protein coding
RefSeq status
MODEL
Organism
Raphanus sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Genomic context

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See LOC108862728 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_06 current ASM80110v3 (GCF_000801105.2) 5 NC_079515.1 (19190843..19193164, complement)
100 previous assembly Rs1.0 (GCF_000801105.1) Unplaced Scaffold NW_017353143.1 (22558986..22561219, complement)

Chromosome 5 - NC_079515.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108862725 Neighboring gene PHD finger protein At1g33420 Neighboring gene putative F-box protein At3g20030 Neighboring gene putative F-box protein At3g17500 Neighboring gene protein BREVIS RADIX-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo transcriptome analysis in radish (Raphanus sativus L.) and identification of critical genes involved in bolting and flowering. Nie S, et al. BMC Genomics, 2016 May 23. PMID 27216755, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable beta-1,3-galactosyltransferase 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000801105.2-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM80110v3 Primary Assembly

Genomic

  1. NC_079515.1 Reference ASM80110v3 Primary Assembly

    Range
    19190843..19193164 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018636954.2 → XP_018492456.1  probable beta-1,3-galactosyltransferase 8

    UniProtKB/TrEMBL
    A0A6J0P732
Nucleotide Protein
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