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LOC108857777 probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 2 [ Raphanus sativus (radish) ]

Gene ID: 108857777, updated on 9-Nov-2023

Summary

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Gene symbol
LOC108857777
Gene description
probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 2
Locus tag
Rs2_01548
Gene type
protein coding
RefSeq status
MODEL
Organism
Raphanus sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Genomic context

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See LOC108857777 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2023_06 current ASM80110v3 (GCF_000801105.2) 1 NC_079511.1 (7593569..7597670)
100 previous assembly Rs1.0 (GCF_000801105.1) Unplaced Scaffold NW_017353139.1 (6911333..6915434)

Chromosome 1 - NC_079511.1Genomic Context describing neighboring genes Neighboring gene precursor of CEP13 Neighboring gene ATP-dependent DNA helicase 2 subunit KU70 Neighboring gene probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 3 Neighboring gene trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trehalose metabolism in response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 2
Names
trehalose-phosphatase/synthase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000801105.2-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM80110v3 Primary Assembly

Genomic

  1. NC_079511.1 Reference ASM80110v3 Primary Assembly

    Range
    7593569..7597670
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018631793.1 → XP_018487295.1  probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 2 isoform X1

    UniProtKB/TrEMBL
    A0A6J0NS70

  2. XM_018631801.1 → XP_018487303.1  probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 2 isoform X2

    UniProtKB/TrEMBL
    A0A6J0NU97
Nucleotide Protein
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