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LOC108856988 sterol 3-beta-glucosyltransferase UGT80B1 [ Raphanus sativus (radish) ]

Gene ID: 108856988, updated on 20-Nov-2023

Summary

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Gene symbol
LOC108856988
Gene description
sterol 3-beta-glucosyltransferase UGT80B1
Locus tag
Rs2_21047
Gene type
protein coding
RefSeq status
MODEL
Organism
Raphanus sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Genomic context

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See LOC108856988 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_06 current ASM80110v3 (GCF_000801105.2) 5 NC_079515.1 (9841904..9845811)
100 previous assembly Rs1.0 (GCF_000801105.1) Unplaced Scaffold NW_017353143.1 (11548279..11552114)

Chromosome 5 - NC_079515.1Genomic Context describing neighboring genes Neighboring gene putative cysteine-rich repeat secretory protein 17 Neighboring gene putative cysteine-rich repeat secretory protein 17 Neighboring gene putative cysteine-rich repeat secretory protein 17 Neighboring gene putative cysteine-rich repeat secretory protein 17

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo transcriptome analysis in radish (Raphanus sativus L.) and identification of critical genes involved in bolting and flowering. Nie S, et al. BMC Genomics, 2016 May 23. PMID 27216755, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sterol 3-beta-glucosyltransferase UGT80B1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000801105.2-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM80110v3 Primary Assembly

Genomic

  1. NC_079515.1 Reference ASM80110v3 Primary Assembly

    Range
    9841904..9845811
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_056986452.1 → XP_056842432.1  sterol 3-beta-glucosyltransferase UGT80B1 isoform X2

    UniProtKB/TrEMBL
    A0A9W3BT03

  2. XM_018630905.2 → XP_018486407.2  sterol 3-beta-glucosyltransferase UGT80B1 isoform X1

    UniProtKB/TrEMBL
    A0A6J0NNS5
Nucleotide Protein
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