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LOC108856297 UDP-arabinopyranose mutase 1 [ Raphanus sativus (radish) ]

Gene ID: 108856297, updated on 20-Nov-2023

Summary

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Gene symbol
LOC108856297
Gene description
UDP-arabinopyranose mutase 1
Locus tag
Rs2_19483
Gene type
protein coding
RefSeq status
MODEL
Organism
Raphanus sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Genomic context

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See LOC108856297 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_06 current ASM80110v3 (GCF_000801105.2) 5 NC_079515.1 (557394..559519, complement)
100 previous assembly Rs1.0 (GCF_000801105.1) Unplaced Scaffold NW_017353143.1 (393656..395768)

Chromosome 5 - NC_079515.1Genomic Context describing neighboring genes Neighboring gene hypersensitive-induced response protein 3 Neighboring gene serine/threonine-protein kinase PBL35 Neighboring gene FACT complex subunit POB3 Neighboring gene COBRA-like protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-arabinopyranose mutase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in UDP-L-arabinose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UDP-arabinopyranose mutase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000801105.2-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM80110v3 Primary Assembly

Genomic

  1. NC_079515.1 Reference ASM80110v3 Primary Assembly

    Range
    557394..559519 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018630066.2 → XP_018485568.1  UDP-arabinopyranose mutase 1

    UniProtKB/TrEMBL
    A0A6J0NPG6
    Conserved Domains (1) summary
    PLN03180
    Location:15 → 355
    PLN03180; reversibly glycosylated polypeptide; Provisional
Nucleotide Protein
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