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LOC108855293 polygalacturonate 4-alpha-galacturonosyltransferase [ Raphanus sativus (radish) ]

Gene ID: 108855293, updated on 20-Nov-2023

Summary

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Gene symbol
LOC108855293
Gene description
polygalacturonate 4-alpha-galacturonosyltransferase
Locus tag
Rs2_19307
Gene type
protein coding
RefSeq status
MODEL
Organism
Raphanus sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Genomic context

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See LOC108855293 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_06 current ASM80110v3 (GCF_000801105.2) 4 NC_079514.1 (51772424..51775632, complement)
100 previous assembly Rs1.0 (GCF_000801105.1) Unplaced Scaffold NW_017353142.1 (49304948..49308138)

Chromosome 4 - NC_079514.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108851276 Neighboring gene uncharacterized LOC130510630 Neighboring gene agamous-like MADS-box protein AGL13 Neighboring gene peroxisomal membrane protein 11E-like Neighboring gene F-box protein PP2-A13

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo transcriptome analysis in radish (Raphanus sativus L.) and identification of critical genes involved in bolting and flowering. Nie S, et al. BMC Genomics, 2016 May 23. PMID 27216755, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonate 4-alpha-galacturonosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polygalacturonate 4-alpha-galacturonosyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000801105.2-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM80110v3 Primary Assembly

Genomic

  1. NC_079514.1 Reference ASM80110v3 Primary Assembly

    Range
    51772424..51775632 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018629069.2 → XP_018484571.1  polygalacturonate 4-alpha-galacturonosyltransferase isoform X1

    UniProtKB/TrEMBL
    A0A6J0NKD5

  2. XM_018629068.2 → XP_018484570.1  polygalacturonate 4-alpha-galacturonosyltransferase isoform X1

    UniProtKB/TrEMBL
    A0A6J0NKD5

  3. XM_018629070.2 → XP_018484572.1  polygalacturonate 4-alpha-galacturonosyltransferase isoform X2

    UniProtKB/TrEMBL
    A0A6J0NIJ1
Nucleotide Protein
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