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LOC108852729 probable xyloglucan galactosyltransferase GT11 [ Raphanus sativus (radish) ]

Gene ID: 108852729, updated on 9-Nov-2023

Summary

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Gene symbol
LOC108852729
Gene description
probable xyloglucan galactosyltransferase GT11
Gene type
protein coding
RefSeq status
MODEL
Organism
Raphanus sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Genomic context

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See LOC108852729 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_06 current ASM80110v3 (GCF_000801105.2) 4 NC_079514.1 (36417920..36420702, complement)
100 previous assembly Rs1.0 (GCF_000801105.1) Unplaced Scaffold NW_017353142.1 (35020219..35023316, complement)

Chromosome 4 - NC_079514.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108849672 Neighboring gene transfer RNA glycine (anticodon UCC) Neighboring gene uncharacterized LOC108833251 Neighboring gene scarecrow-like protein 33

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable xyloglucan galactosyltransferase GT11

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000801105.2-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM80110v3 Primary Assembly

Genomic

  1. NC_079514.1 Reference ASM80110v3 Primary Assembly

    Range
    36417920..36420702 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018626221.2 → XP_018481723.2  probable xyloglucan galactosyltransferase GT11

    UniProtKB/TrEMBL
    A0A6J0NCX8
Nucleotide Protein
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