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LOC108848859 probable glucomannan 4-beta-mannosyltransferase 15 [ Raphanus sativus (radish) ]

Gene ID: 108848859, updated on 9-Nov-2023

Summary

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Gene symbol
LOC108848859
Gene description
probable glucomannan 4-beta-mannosyltransferase 15
Locus tag
Rs2_18397
Gene type
protein coding
RefSeq status
MODEL
Organism
Raphanus sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Genomic context

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See LOC108848859 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_06 current ASM80110v3 (GCF_000801105.2) 4 NC_079514.1 (44141507..44151873)
100 previous assembly Rs1.0 (GCF_000801105.1) Unplaced Scaffold NW_017353142.1 (44007537..44017834)

Chromosome 4 - NC_079514.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108852905 Neighboring gene uncharacterized LOC130511377 Neighboring gene uncharacterized protein At2g29880-like Neighboring gene uncharacterized LOC130511493

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable glucomannan 4-beta-mannosyltransferase 15
Names
probable mannan synthase 15
putative mannan synthase 15

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000801105.2-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM80110v3 Primary Assembly

Genomic

  1. NC_079514.1 Reference ASM80110v3 Primary Assembly

    Range
    44141507..44151873
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018622313.2 → XP_018477815.2  probable glucomannan 4-beta-mannosyltransferase 15 isoform X1

    UniProtKB/TrEMBL
    A0A6J0MZC0

  2. XM_018622314.2 → XP_018477816.2  probable glucomannan 4-beta-mannosyltransferase 15 isoform X2

    UniProtKB/TrEMBL
    A0A6J0N1D7

  3. XM_018622315.2 → XP_018477817.2  probable glucomannan 4-beta-mannosyltransferase 15 isoform X3

    UniProtKB/TrEMBL
    A0A6J0MZC1
Nucleotide Protein
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