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LOC108847491 sucrose synthase 1 [ Raphanus sativus (radish) ]

Gene ID: 108847491, updated on 20-Nov-2023

Summary

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Gene symbol
LOC108847491
Gene description
sucrose synthase 1
Locus tag
Rs2_11712
Gene type
protein coding
RefSeq status
MODEL
Organism
Raphanus sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Genomic context

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See LOC108847491 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_06 current ASM80110v3 (GCF_000801105.2) 3 NC_079513.1 (23990432..23994318)
100 previous assembly Rs1.0 (GCF_000801105.1) Unplaced Scaffold NW_017353141.1 (23892500..23896380)

Chromosome 3 - NC_079513.1Genomic Context describing neighboring genes Neighboring gene DNA repair protein RAD51 homolog 1 Neighboring gene phosphoinositide phosphatase SAC4 Neighboring gene auxin-responsive protein SAUR76-like Neighboring gene protein SMALL AUXIN UP-REGULATED RNA 12

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Construction of a high-resolution linkage map of Rfd1, a restorer-of-fertility locus for cytoplasmic male sterility conferred by DCGMS cytoplasm in radish (Raphanus sativus L.) using synteny between radish and Arabidopsis genomes. Cho Y, et al. Theor Appl Genet, 2012 Aug. PMID 22434503
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sucrose synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sucrose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sucrose synthase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000801105.2-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM80110v3 Primary Assembly

Genomic

  1. NC_079513.1 Reference ASM80110v3 Primary Assembly

    Range
    23990432..23994318
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018620738.2 → XP_018476240.2  sucrose synthase 1

    UniProtKB/TrEMBL
    A0A6J0MUW7
Nucleotide Protein
Heading Accession and Version

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