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LOC108846213 cytochrome P450 708A2-like [ Raphanus sativus (radish) ]

Gene ID: 108846213, updated on 20-Nov-2023

Summary

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Gene symbol
LOC108846213
Gene description
cytochrome P450 708A2-like
Locus tag
Rs2_12452
Gene type
protein coding
RefSeq status
MODEL
Organism
Raphanus sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Genomic context

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See LOC108846213 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_06 current ASM80110v3 (GCF_000801105.2) 3 NC_079513.1 (27600701..27603954, complement)
100 previous assembly Rs1.0 (GCF_000801105.1) Unplaced Scaffold NW_017353141.1 (28104903..28108024, complement)

Chromosome 3 - NC_079513.1Genomic Context describing neighboring genes Neighboring gene protein NETWORKED 4B Neighboring gene cellulose synthase A catalytic subunit 3 [UDP-forming] Neighboring gene autophagy-related protein 18e Neighboring gene probable mediator of RNA polymerase II transcription subunit 26b Neighboring gene reticulon-like protein B21

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables monooxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sterol metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cytochrome P450 708A2-like
Names
Cytochrome P450 superfamily protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000801105.2-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM80110v3 Primary Assembly

Genomic

  1. NC_079513.1 Reference ASM80110v3 Primary Assembly

    Range
    27600701..27603954 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018619436.2 → XP_018474938.1  cytochrome P450 708A2-like

    UniProtKB/TrEMBL
    A0A6J0MSS0
Nucleotide Protein
Heading Accession and Version

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