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LOC108842997 cellulose synthase-like protein D2 [ Raphanus sativus (radish) ]

Gene ID: 108842997, updated on 9-Nov-2023

Summary

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Gene symbol
LOC108842997
Gene description
cellulose synthase-like protein D2
Locus tag
Rs2_06823
Gene type
protein coding
RefSeq status
MODEL
Organism
Raphanus sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Genomic context

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See LOC108842997 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_06 current ASM80110v3 (GCF_000801105.2) 2 NC_079512.1 (28744436..28749688)
100 previous assembly Rs1.0 (GCF_000801105.1) Unplaced Scaffold NW_017353140.1 (31367621..31372821)

Chromosome 2 - NC_079512.1Genomic Context describing neighboring genes Neighboring gene probable arabinosyltransferase ARAD1 Neighboring gene probable LRR receptor-like serine/threonine-protein kinase At5g16900 Neighboring gene uncharacterized LOC108840787 Neighboring gene uncharacterized LOC108834024

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cellulose synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mannan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type primary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cellulose synthase-like protein D2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000801105.2-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM80110v3 Primary Assembly

Genomic

  1. NC_079512.1 Reference ASM80110v3 Primary Assembly

    Range
    28744436..28749688
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_057002951.1 → XP_056858931.1  cellulose synthase-like protein D2

    UniProtKB/TrEMBL
    A0A6J0MJA6

  2. XM_018616070.2 → XP_018471572.2  cellulose synthase-like protein D2

    UniProtKB/TrEMBL
    A0A6J0MJA6

  3. XM_018616069.2 → XP_018471571.2  cellulose synthase-like protein D2

    UniProtKB/TrEMBL
    A0A6J0MJA6
Nucleotide Protein
Heading Accession and Version

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