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LOC108836628 cytochrome P450 708A2-like [ Raphanus sativus (radish) ]

Gene ID: 108836628, updated on 9-Nov-2023

Summary

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Gene symbol
LOC108836628
Gene description
cytochrome P450 708A2-like
Locus tag
Rs2_30515
Gene type
protein coding
RefSeq status
MODEL
Organism
Raphanus sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Genomic context

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See LOC108836628 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_06 current ASM80110v3 (GCF_000801105.2) 6 NC_079516.1 (43275534..43277913, complement)
100 previous assembly Rs1.0 (GCF_000801105.1) Unplaced Scaffold NW_017357627.1 (8..1828)

Chromosome 6 - NC_079516.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108811595 Neighboring gene uncharacterized LOC108836629 Neighboring gene cytochrome P450 705A22-like Neighboring gene seco-amyrin synthase-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables monooxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sterol metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cytochrome P450 708A2-like
Names
Cytochrome P450 708A2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000801105.2-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM80110v3 Primary Assembly

Genomic

  1. NC_079516.1 Reference ASM80110v3 Primary Assembly

    Range
    43275534..43277913 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_056987655.1 → XP_056843635.1  cytochrome P450 708A2-like

    UniProtKB/TrEMBL
    A0A6J0JSI0
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases