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LOC108827579 callose synthase 11 [ Raphanus sativus (radish) ]

Gene ID: 108827579, updated on 9-Nov-2023

Summary

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Gene symbol
LOC108827579
Gene description
callose synthase 11
Gene type
protein coding
RefSeq status
MODEL
Organism
Raphanus sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Genomic context

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See LOC108827579 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_06 current ASM80110v3 (GCF_000801105.2) 9 NC_079519.1 (21699886..21706007)
100 previous assembly Rs1.0 (GCF_000801105.1) Unplaced Scaffold NW_017353147.1 (20978431..20984530, complement)

Chromosome 9 - NC_079519.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108826511 Neighboring gene L-type lectin-domain containing receptor kinase VII.1 Neighboring gene small nucleolar RNA J33 Neighboring gene uncharacterized LOC108826325 Neighboring gene uncharacterized protein At4g04980

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo transcriptome analysis in radish (Raphanus sativus L.) and identification of critical genes involved in bolting and flowering. Nie S, et al. BMC Genomics, 2016 May 23. PMID 27216755, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,3-beta-D-glucan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in (1->3)-beta-D-glucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 1,3-beta-D-glucan synthase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
callose synthase 11

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000801105.2-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM80110v3 Primary Assembly

Genomic

  1. NC_079519.1 Reference ASM80110v3 Primary Assembly

    Range
    21699886..21706007
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018601011.2 → XP_018456513.2  callose synthase 11

    UniProtKB/TrEMBL
    A0A6J0LAG3

  2. XM_018601010.2 → XP_018456512.2  callose synthase 11

    UniProtKB/TrEMBL
    A0A6J0LAG3

  3. XM_018601009.2 → XP_018456511.2  callose synthase 11

    UniProtKB/TrEMBL
    A0A6J0LAG3

  4. XM_018601007.2 → XP_018456509.2  callose synthase 11

    UniProtKB/TrEMBL
    A0A6J0LAG3
Nucleotide Protein
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