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LOC108827439 cellulose synthase A catalytic subunit 6 [UDP-forming] [ Raphanus sativus (radish) ]

Gene ID: 108827439, updated on 20-Nov-2023

Summary

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Gene symbol
LOC108827439
Gene description
cellulose synthase A catalytic subunit 6 [UDP-forming]
Locus tag
Rs2_43624
Gene type
protein coding
RefSeq status
MODEL
Organism
Raphanus sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Genomic context

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See LOC108827439 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_06 current ASM80110v3 (GCF_000801105.2) 9 NC_079519.1 (36514272..36519796)
100 previous assembly Rs1.0 (GCF_000801105.1) Unplaced Scaffold NW_017353147.1 (38202408..38207679, complement)

Chromosome 9 - NC_079519.1Genomic Context describing neighboring genes Neighboring gene transfer RNA histidin (anticodon GUG) Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC108836155 Neighboring gene glutamate dehydrogenase 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cellulose synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type primary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cellulose synthase A catalytic subunit 6 [UDP-forming]

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000801105.2-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM80110v3 Primary Assembly

Genomic

  1. NC_079519.1 Reference ASM80110v3 Primary Assembly

    Range
    36514272..36519796
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_056995307.1 → XP_056851287.1  cellulose synthase A catalytic subunit 6 [UDP-forming] isoform X2

    UniProtKB/TrEMBL
    A0A9W3CIE7

  2. XM_018600834.2 → XP_018456336.1  cellulose synthase A catalytic subunit 6 [UDP-forming] isoform X1

    UniProtKB/TrEMBL
    A0A6J0L9Z2
Nucleotide Protein
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