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LOC108824089 F-box protein GID2 [ Raphanus sativus (radish) ]

Gene ID: 108824089, updated on 9-Nov-2023

Summary

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Gene symbol
LOC108824089
Gene description
F-box protein GID2
Locus tag
Rs2_07668
Gene type
protein coding
RefSeq status
MODEL
Organism
Raphanus sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Genomic context

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See LOC108824089 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_06 current ASM80110v3 (GCF_000801105.2) 2 NC_079512.1 (33299883..33300649)
100 previous assembly Rs1.0 (GCF_000801105.1) Unplaced Scaffold NW_017353140.1 (36614415..36615190)

Chromosome 2 - NC_079512.1Genomic Context describing neighboring genes Neighboring gene endoplasmin homolog Neighboring gene E3 ubiquitin-protein ligase APD1 Neighboring gene 3-oxo-Delta(4,5)-steroid 5-beta-reductase Neighboring gene acyl-CoA-binding domain-containing protein 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo transcriptome analysis in radish (Raphanus sativus L.) and identification of critical genes involved in bolting and flowering. Nie S, et al. BMC Genomics, 2016 May 23. PMID 27216755, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of gibberellic acid mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SCF ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
F-box protein GID2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000801105.2-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM80110v3 Primary Assembly

Genomic

  1. NC_079512.1 Reference ASM80110v3 Primary Assembly

    Range
    33299883..33300649
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018597436.2 → XP_018452938.1  F-box protein GID2

    UniProtKB/TrEMBL
    A0A6J0KZF6
Nucleotide Protein
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