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LOC108820623 uncharacterized LOC108820623 [ Raphanus sativus (radish) ]

Gene ID: 108820623, updated on 20-Nov-2023

Summary

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Gene symbol
LOC108820623
Gene description
uncharacterized LOC108820623
Locus tag
Rs2_36252
Gene type
protein coding
RefSeq status
MODEL
Organism
Raphanus sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Genomic context

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See LOC108820623 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_06 current ASM80110v3 (GCF_000801105.2) 8 NC_079518.1 (2055888..2059896, complement)
100 previous assembly Rs1.0 (GCF_000801105.1) Unplaced Scaffold NW_017353146.1 (2151428..2155469, complement)

Chromosome 8 - NC_079518.1Genomic Context describing neighboring genes Neighboring gene glucan endo-1,3-beta-glucosidase 1 Neighboring gene putative lactoylglutathione lyase Neighboring gene aminomethyltransferase, mitochondrial Neighboring gene 25.3 kDa vesicle transport protein SEC22-1-like Neighboring gene aspartic proteinase A1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,6-mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glycolipid mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in GPI anchor biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of mannosyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC108820623

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000801105.2-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM80110v3 Primary Assembly

Genomic

  1. NC_079518.1 Reference ASM80110v3 Primary Assembly

    Range
    2055888..2059896 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018593603.2 → XP_018449105.1  uncharacterized protein LOC108820623 isoform X2

    UniProtKB/TrEMBL
    A0A6J0KMK6

  2. XM_018593602.2 → XP_018449104.1  uncharacterized protein LOC108820623 isoform X1

    UniProtKB/TrEMBL
    A0A6J0KPY5

  3. XM_018593604.2 → XP_018449106.1  uncharacterized protein LOC108820623 isoform X3

    UniProtKB/TrEMBL
    A0A6J0KNJ2
Nucleotide Protein
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