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LOC108818797 probable starch synthase 4, chloroplastic/amyloplastic [ Raphanus sativus (radish) ]

Gene ID: 108818797, updated on 18-Sep-2024

Summary

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Gene symbol
LOC108818797
Gene description
probable starch synthase 4, chloroplastic/amyloplastic
Locus tag
Rs2_38097
Gene type
protein coding
RefSeq status
MODEL
Organism
Raphanus sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Genomic context

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See LOC108818797 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2023_06 current ASM80110v3 (GCF_000801105.2) 8 NC_079518.1 (13329856..13334695, complement)
100 previous assembly Rs1.0 (GCF_000801105.1) Unplaced Scaffold NW_017353146.1 (15513341..15518080, complement)

Chromosome 8 - NC_079518.1Genomic Context describing neighboring genes Neighboring gene potassium channel KAT2-like Neighboring gene putative glycine-rich cell wall structural protein 1 Neighboring gene probable purine permease 10 Neighboring gene probable purine permease 10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Construction of a high-resolution linkage map of Rfd1, a restorer-of-fertility locus for cytoplasmic male sterility conferred by DCGMS cytoplasm in radish (Raphanus sativus L.) using synteny between radish and Arabidopsis genomes. Cho Y, et al. Theor Appl Genet, 2012 Aug. PMID 22434503
  2. De novo transcriptome analysis in radish (Raphanus sativus L.) and identification of critical genes involved in bolting and flowering. Nie S, et al. BMC Genomics, 2016 May 23. PMID 27216755, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable starch synthase 4, chloroplastic/amyloplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000801105.2-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM80110v3 Primary Assembly

Genomic

  1. NC_079518.1 Reference ASM80110v3 Primary Assembly

    Range
    13329856..13334695 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018591732.2 → XP_018447234.1  probable starch synthase 4, chloroplastic/amyloplastic isoform X2

    UniProtKB/TrEMBL
    A0A6J0KJQ7

  2. XM_018591731.2 → XP_018447233.1  probable starch synthase 4, chloroplastic/amyloplastic isoform X1

    UniProtKB/TrEMBL
    A0A6J0KI33
Nucleotide Protein
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Gene LinkOut

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Molecular Biology Databases