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LOC108818786 amine oxidase [copper-containing] alpha 3, peroxisomal [ Raphanus sativus (radish) ]

Gene ID: 108818786, updated on 18-Sep-2024

Summary

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Gene symbol
LOC108818786
Gene description
amine oxidase [copper-containing] alpha 3, peroxisomal
Locus tag
Rs2_38336
Gene type
protein coding
RefSeq status
MODEL
Organism
Raphanus sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Genomic context

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See LOC108818786 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_06 current ASM80110v3 (GCF_000801105.2) 8 NC_079518.1 (15525796..15534891)
100 previous assembly Rs1.0 (GCF_000801105.1) Unplaced Scaffold NW_017353146.1 (18253973..18263428, complement)

Chromosome 8 - NC_079518.1Genomic Context describing neighboring genes Neighboring gene amine oxidase [copper-containing] alpha 2, peroxisomal-like Neighboring gene pentatricopeptide repeat-containing protein At1g31430-like Neighboring gene ATP-dependent DNA helicase Q-like 2 Neighboring gene uncharacterized LOC108820114 Neighboring gene uncharacterized LOC108820113

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables copper ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables primary methylamine oxidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables quinone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in amine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
amine oxidase [copper-containing] alpha 3, peroxisomal
Names
Copper amine oxidase family protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000801105.2-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM80110v3 Primary Assembly

Genomic

  1. NC_079518.1 Reference ASM80110v3 Primary Assembly

    Range
    15525796..15534891
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018591721.2 → XP_018447223.1  amine oxidase [copper-containing] alpha 3, peroxisomal

    UniProtKB/TrEMBL
    A0A6J0KI23
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases