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LOC108818472 UDP-arabinopyranose mutase 2 [ Raphanus sativus (radish) ]

Gene ID: 108818472, updated on 9-Nov-2023

Summary

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Gene symbol
LOC108818472
Gene description
UDP-arabinopyranose mutase 2
Locus tag
Rs2_06728
Gene type
protein coding
RefSeq status
MODEL
Organism
Raphanus sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Genomic context

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See LOC108818472 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_06 current ASM80110v3 (GCF_000801105.2) 2 NC_079512.1 (28199502..28201292)
100 previous assembly Rs1.0 (GCF_000801105.1) Unplaced Scaffold NW_017353140.1 (30492359..30494147)

Chromosome 2 - NC_079512.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108821193 Neighboring gene putative F-box/kelch-repeat protein At1g32430 Neighboring gene F-box protein At4g11590-like Neighboring gene uncharacterized LOC130508440

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Construction of a high-resolution linkage map of Rfd1, a restorer-of-fertility locus for cytoplasmic male sterility conferred by DCGMS cytoplasm in radish (Raphanus sativus L.) using synteny between radish and Arabidopsis genomes. Cho Y, et al. Theor Appl Genet, 2012 Aug. PMID 22434503
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-arabinopyranose mutase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in UDP-L-arabinose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UDP-arabinopyranose mutase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000801105.2-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM80110v3 Primary Assembly

Genomic

  1. NC_079512.1 Reference ASM80110v3 Primary Assembly

    Range
    28199502..28201292
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018591453.2 → XP_018446955.2  UDP-arabinopyranose mutase 2

    UniProtKB/TrEMBL
    A0A6J0KGC8
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases