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LOC108818353 rhamnogalacturonan I rhamnosyltransferase 1 [ Raphanus sativus (radish) ]

Gene ID: 108818353, updated on 20-Nov-2023

Summary

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Gene symbol
LOC108818353
Gene description
rhamnogalacturonan I rhamnosyltransferase 1
Locus tag
Rs2_32836
Gene type
protein coding
RefSeq status
MODEL
Organism
Raphanus sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Genomic context

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See LOC108818353 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_06 current ASM80110v3 (GCF_000801105.2) 7 NC_079517.1 (2651549..2654507)
100 previous assembly Rs1.0 (GCF_000801105.1) Unplaced Scaffold NW_017353145.1 (4387673..4389770)

Chromosome 7 - NC_079517.1Genomic Context describing neighboring genes Neighboring gene glucosamine 6-phosphate N-acetyltransferase-like Neighboring gene 30S ribosomal protein 3-2, chloroplastic Neighboring gene uncharacterized LOC130497736 Neighboring gene calcium/calmodulin-regulated receptor-like kinase 2 Neighboring gene F-box/LRR-repeat/kelch-repeat protein At1g09650

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
rhamnogalacturonan I rhamnosyltransferase 1
Names
O-fucosyltransferase family protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000801105.2-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM80110v3 Primary Assembly

Genomic

  1. NC_079517.1 Reference ASM80110v3 Primary Assembly

    Range
    2651549..2654507
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018591311.2 → XP_018446813.1  rhamnogalacturonan I rhamnosyltransferase 1

    UniProtKB/TrEMBL
    A0A6J0KGV6
Nucleotide Protein
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