U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC108813095 callose synthase 9-like [ Raphanus sativus (radish) ]

Gene ID: 108813095, updated on 20-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
LOC108813095
Gene description
callose synthase 9-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Raphanus sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC108813095 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
48
Annotation release Status Assembly Chr Location
RS_2023_06 current ASM80110v3 (GCF_000801105.2) 6 NC_079516.1 (1804897..1816210)
100 previous assembly Rs1.0 (GCF_000801105.1) Unplaced Scaffold NW_017353144.1 (2089000..2100157, complement)

Chromosome 6 - NC_079516.1Genomic Context describing neighboring genes Neighboring gene dolichol-phosphate mannose synthase subunit 3-like Neighboring gene transfer RNA lysine (anticodon UUU) Neighboring gene purple acid phosphatase 15 Neighboring gene E3 ubiquitin-protein ligase complex SLX5-SLX8 subunit SLX8-like

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,3-beta-D-glucan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in (1->3)-beta-D-glucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 1,3-beta-D-glucan synthase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
LOW QUALITY PROTEIN: callose synthase 9-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000801105.2-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM80110v3 Primary Assembly

Genomic

  1. NC_079516.1 Reference ASM80110v3 Primary Assembly

    Range
    1804897..1816210
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_056989546.1 → XP_056845526.1  LOW QUALITY PROTEIN: callose synthase 9-like

    UniProtKB/TrEMBL
    A0A9W3C221
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases