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LOC108811678 probable galacturonosyltransferase 4 [ Raphanus sativus (radish) ]

Gene ID: 108811678, updated on 9-Nov-2023

Summary

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Gene symbol
LOC108811678
Gene description
probable galacturonosyltransferase 4
Locus tag
Rs2_15319
Gene type
protein coding
RefSeq status
MODEL
Organism
Raphanus sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Genomic context

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See LOC108811678 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_06 current ASM80110v3 (GCF_000801105.2) 4 NC_079514.1 (15943176..15946242, complement)
100 previous assembly Rs1.0 (GCF_000801105.1) Unplaced Scaffold NW_017353144.1 (51029479..51032541, complement)

Chromosome 4 - NC_079514.1Genomic Context describing neighboring genes Neighboring gene NDR1/HIN1-like protein 10 Neighboring gene uncharacterized LOC108811679 Neighboring gene myb family transcription factor PHL7 Neighboring gene C2 and GRAM domain-containing protein At1g03370 Neighboring gene probable E3 ubiquitin-protein ligase EDA40

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonate 4-alpha-galacturonosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable galacturonosyltransferase 4
Names
putative galacturonosyltransferase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000801105.2-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM80110v3 Primary Assembly

Genomic

  1. NC_079514.1 Reference ASM80110v3 Primary Assembly

    Range
    15943176..15946242 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018583765.2 → XP_018439267.2  probable galacturonosyltransferase 4

    UniProtKB/TrEMBL
    A0A6J0JUB4
Nucleotide Protein
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