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Pgant6 Polypeptide N-Acetylgalactosaminyltransferase 6 [ Agrilus planipennis (emerald ash borer) ]

Gene ID: 108742353, updated on 23-May-2024

Summary

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Gene symbol
Pgant6
Gene description
Polypeptide N-Acetylgalactosaminyltransferase 6
See related
EnsemblRapid:LOC108742353
Gene type
protein coding
RefSeq status
MODEL
Organism
Agrilus planipennis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Elateriformia; Buprestoidea; Buprestidae; Agrilinae; Agrilus
Orthologs
fruit fly all
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Genomic context

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See Pgant6 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
101 current Apla_2.0 (GCF_000699045.2) Unplaced Scaffold NW_020439042.1 (230748..233565)
100 previous assembly Apla_1.0 (GCF_000699045.1) Unplaced Scaffold NW_017259993.1 (230200..232416)

NW_020439042.1Genomic Context describing neighboring genes Neighboring gene ribosomal protein L27A Neighboring gene uncharacterized LOC112905102 Neighboring gene transmembrane protein 131-like Neighboring gene 28S ribosomal protein S10, mitochondrial-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
N-acetylgalactosaminyltransferase 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Agrilus planipennis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Apla_2.0 Primary Assembly

Genomic

  1. NW_020439042.1 Reference Apla_2.0 Primary Assembly

    Range
    230748..233565
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025976813.1 → XP_025832598.1  N-acetylgalactosaminyltransferase 6

    UniProtKB/TrEMBL
    A0A7F5R9E3
    Related
    XP_025832598.1, XM_025976813.1
    Conserved Domains (2) summary
    cd02510
    Location:3 → 256
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:273 → 397
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein
Heading Accession and Version

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