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LOC108738031 alkylated DNA repair protein alkB homolog 8 [ Agrilus planipennis (emerald ash borer) ]

Gene ID: 108738031, updated on 10-May-2024

Summary

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Gene symbol
LOC108738031
Gene description
alkylated DNA repair protein alkB homolog 8
See related
EnsemblRapid:LOC108738031
Gene type
protein coding
RefSeq status
MODEL
Organism
Agrilus planipennis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Elateriformia; Buprestoidea; Buprestidae; Agrilinae; Agrilus
Orthologs
fruit fly all
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Genomic context

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See LOC108738031 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
101 current Apla_2.0 (GCF_000699045.2) Unplaced Scaffold NW_020439010.1 (456125..458912, complement)
100 previous assembly Apla_1.0 (GCF_000699045.1) Unplaced Scaffold NW_017259759.1 (454684..457471, complement)

NW_020439010.1Genomic Context describing neighboring genes Neighboring gene Mediator complex subunit 25 Neighboring gene toll-interacting protein Neighboring gene THO complex subunit 2-like protein Neighboring gene zinc finger protein 271-like Neighboring gene over compensating males

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables S-adenosylmethionine-dependent methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA wobble uridine modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alkylated DNA repair protein alkB homolog 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Agrilus planipennis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Apla_2.0 Primary Assembly

Genomic

  1. NW_020439010.1 Reference Apla_2.0 Primary Assembly

    Range
    456125..458912 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018471242.1 → XP_018326744.1  alkylated DNA repair protein alkB homolog 8

    UniProtKB/TrEMBL
    A0A1W4WS58
    Related
    XP_018326744.1, XM_018471242.1
Nucleotide Protein
Heading Accession and Version

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