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Hs2st Heparan sulfate 2-O-sulfotransferase [ Agrilus planipennis (emerald ash borer) ]

Gene ID: 108736970, updated on 23-May-2024

Summary

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Gene symbol
Hs2st
Gene description
Heparan sulfate 2-O-sulfotransferase
See related
EnsemblRapid:LOC108736970
Gene type
protein coding
RefSeq status
MODEL
Organism
Agrilus planipennis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Elateriformia; Buprestoidea; Buprestidae; Agrilinae; Agrilus
Annotation information
Annotation category: partial on reference assembly
Orthologs
fruit fly all
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Genomic context

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See Hs2st in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
101 current Apla_2.0 (GCF_000699045.2) Unplaced Scaffold NW_020440372.1 (183979..198964, complement)
100 previous assembly Apla_1.0 (GCF_000699045.1) Unplaced Scaffold NW_017259726.1 (182688..197651, complement)

NW_020440372.1Genomic Context describing neighboring genes Neighboring gene adenylate cyclase type 8-like Neighboring gene hydroxyacid oxidase 1 Neighboring gene uncharacterized LOC108736988 Neighboring gene maternal protein tudor-like Neighboring gene Ki-ras-induced actin-interacting protein-IP3R-interacting domain olf186-M Neighboring gene E3 ubiquitin-protein ligase hyd Neighboring gene small Cajal body-specific RNA 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heparan sulfate 2-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, enzymatic modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparin sulfate O-sulfotransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Agrilus planipennis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Apla_2.0 Primary Assembly

Genomic

  1. NW_020440372.1 Reference Apla_2.0 Primary Assembly

    Range
    183979..198964 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018469603.1 → XP_018325105.1  heparin sulfate O-sulfotransferase

    UniProtKB/TrEMBL
    A0A1W4WYF9
    Related
    XP_018325105.1, XM_018469603.1
Nucleotide Protein
Heading Accession and Version

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