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LOC108735466 lactosylceramide 4-alpha-galactosyltransferase-like [ Agrilus planipennis (emerald ash borer) ]

Gene ID: 108735466, updated on 21-Dec-2023

Summary

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Gene symbol
LOC108735466
Gene description
lactosylceramide 4-alpha-galactosyltransferase-like
See related
EnsemblRapid:LOC108735466
Gene type
protein coding
RefSeq status
MODEL
Organism
Agrilus planipennis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Elateriformia; Buprestoidea; Buprestidae; Agrilinae; Agrilus
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Genomic context

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See LOC108735466 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
101 current Apla_2.0 (GCF_000699045.2) Unplaced Scaffold NW_020442468.1 (3801886..3834807)
100 previous assembly Apla_1.0 (GCF_000699045.1) Unplaced Scaffold NW_017259597.1 (3839555..3843174)

NW_020442468.1Genomic Context describing neighboring genes Neighboring gene inositol polyphosphate 5-phosphatase E Neighboring gene dynein regulatory complex subunit 2 Neighboring gene Odorant-binding protein 59a Neighboring gene calponin homology domain-containing protein DDB_G0272472 Neighboring gene uncharacterized LOC108735448

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycosphingolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lactosylceramide 4-alpha-galactosyltransferase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Agrilus planipennis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Apla_2.0 Primary Assembly

Genomic

  1. NW_020442468.1 Reference Apla_2.0 Primary Assembly

    Range
    3801886..3834807
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025981353.1 → XP_025837138.1  lactosylceramide 4-alpha-galactosyltransferase-like

    UniProtKB/TrEMBL
    A0A1W4WGB2
    Related
    XP_025837138.1, XM_025981353.1
    Conserved Domains (2) summary
    pfam04572
    Location:238 → 267
    Gb3_synth; Alpha 1,4-glycosyltransferase conserved region
    cl19952
    Location:97 → 215
    Gly_transf_sug; Glycosyltransferase sugar-binding region containing DXD motif

  2. XM_018467447.1 → XP_018322949.1  lactosylceramide 4-alpha-galactosyltransferase-like

    UniProtKB/TrEMBL
    A0A1W4WGB2
    Related
    XP_018322949.1, XM_018467447.1
    Conserved Domains (2) summary
    pfam04572
    Location:238 → 267
    Gb3_synth; Alpha 1,4-glycosyltransferase conserved region
    cl19952
    Location:97 → 215
    Gly_transf_sug; Glycosyltransferase sugar-binding region containing DXD motif

  3. XM_018467472.1 → XP_018322974.1  lactosylceramide 4-alpha-galactosyltransferase-like

    UniProtKB/TrEMBL
    A0A1W4WGB2
    Related
    XP_018322974.1, XM_018467472.1
    Conserved Domains (2) summary
    pfam04572
    Location:238 → 267
    Gb3_synth; Alpha 1,4-glycosyltransferase conserved region
    cl19952
    Location:97 → 215
    Gly_transf_sug; Glycosyltransferase sugar-binding region containing DXD motif

  4. XM_018467428.2 → XP_018322930.1  lactosylceramide 4-alpha-galactosyltransferase-like

    UniProtKB/TrEMBL
    A0A1W4WGB2
    Related
    XP_018322930.1, XM_018467428.2
    Conserved Domains (2) summary
    pfam04572
    Location:238 → 267
    Gb3_synth; Alpha 1,4-glycosyltransferase conserved region
    cl19952
    Location:97 → 215
    Gly_transf_sug; Glycosyltransferase sugar-binding region containing DXD motif

  5. XM_018467462.2 → XP_018322964.1  lactosylceramide 4-alpha-galactosyltransferase-like

    UniProtKB/TrEMBL
    A0A1W4WGB2
    Related
    XP_018322964.1, XM_018467462.2
    Conserved Domains (2) summary
    pfam04572
    Location:238 → 267
    Gb3_synth; Alpha 1,4-glycosyltransferase conserved region
    cl19952
    Location:97 → 215
    Gly_transf_sug; Glycosyltransferase sugar-binding region containing DXD motif

  6. XM_018467437.1 → XP_018322939.1  lactosylceramide 4-alpha-galactosyltransferase-like

    UniProtKB/TrEMBL
    A0A1W4WGB2
    Related
    XP_018322939.1, XM_018467437.1
    Conserved Domains (2) summary
    pfam04572
    Location:238 → 267
    Gb3_synth; Alpha 1,4-glycosyltransferase conserved region
    cl19952
    Location:97 → 215
    Gly_transf_sug; Glycosyltransferase sugar-binding region containing DXD motif

  7. XM_018467455.2 → XP_018322957.1  lactosylceramide 4-alpha-galactosyltransferase-like

    UniProtKB/TrEMBL
    A0A1W4WGB2
    Related
    XP_018322957.1, XM_018467455.2
    Conserved Domains (2) summary
    pfam04572
    Location:238 → 267
    Gb3_synth; Alpha 1,4-glycosyltransferase conserved region
    cl19952
    Location:97 → 215
    Gly_transf_sug; Glycosyltransferase sugar-binding region containing DXD motif
Nucleotide Protein
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