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LOC108733038 beta-1,3-galactosyltransferase brn [ Agrilus planipennis (emerald ash borer) ]

Gene ID: 108733038, updated on 21-Dec-2023

Summary

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Gene symbol
LOC108733038
Gene description
beta-1,3-galactosyltransferase brn
See related
EnsemblRapid:LOC108733038
Gene type
protein coding
RefSeq status
MODEL
Organism
Agrilus planipennis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Elateriformia; Buprestoidea; Buprestidae; Agrilinae; Agrilus
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Genomic context

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See LOC108733038 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
1
Annotation release Status Assembly Chr Location
101 current Apla_2.0 (GCF_000699045.2) Unplaced Scaffold NW_020438915.1 (946415..947825, complement)
100 previous assembly Apla_1.0 (GCF_000699045.1) Unplaced Scaffold NW_017259632.1 (947877..949287, complement)

NW_020438915.1Genomic Context describing neighboring genes Neighboring gene mitochondrial translation release factor 1 Neighboring gene golgin subfamily A member 4 Neighboring gene uncharacterized LOC112904197 Neighboring gene Sjoegren syndrome nuclear autoantigen 1 homolog Neighboring gene transmembrane protein 98 Neighboring gene centrosomin-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,3-galactosyltransferase brn

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Agrilus planipennis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Apla_2.0 Primary Assembly

Genomic

  1. NW_020438915.1 Reference Apla_2.0 Primary Assembly

    Range
    946415..947825 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018464065.1 → XP_018319567.1  beta-1,3-galactosyltransferase brn

    UniProtKB/TrEMBL
    A0A1W4WGH9
    Related
    XP_018319567.1, XM_018464065.1
    Conserved Domains (1) summary
    cl21608
    Location:104 → 326
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

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