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snrpd1.S small nuclear ribonucleoprotein D1 polypeptide S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 108720016, updated on 4-Nov-2024

Summary

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Official Symbol
snrpd1.S
Official Full Name
small nuclear ribonucleoprotein D1 polypeptide S homeolog
Primary source
Xenbase:XB-GENE-17336644
Locus tag
XELAEV_18033282mg
See related
EnsemblRapid:ENSXLAG00005002024 AllianceGenome:Xenbase:XB-GENE-17336644
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Summary
Predicted to enable RNA binding activity. Predicted to act upstream of or within spliceosomal snRNP assembly. Predicted to be located in nucleus. Predicted to be part of SMN-Sm protein complex; nucleus; and pICln-Sm protein complex. Human ortholog(s) of this gene implicated in connective tissue disease; nephritis; proteinuria; and systemic lupus erythematosus. Orthologous to human SNRPD1 (small nuclear ribonucleoprotein D1 polypeptide). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See snrpd1.S in Genome Data Viewer
Location:
chromosome: 6S
Exon count:
4
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 6S NC_054382.1 (55149396..55164958)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 6S NC_030735.1 (52420560..52436007)

Chromosome 6S - NC_054382.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108720014 Neighboring gene uncharacterized LOC108704076 Neighboring gene uncharacterized LOC121395067 Neighboring gene uncharacterized LOC121395100

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within RNA processing IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within RNA splicing IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within mRNA processing IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within spliceosomal snRNP assembly IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of SMN-Sm protein complex IEA
Inferred from Electronic Annotation
more info
  
part_of U1 snRNP IEA
Inferred from Electronic Annotation
more info
  
part_of U12-type spliceosomal complex IEA
Inferred from Electronic Annotation
more info
  
part_of U2 snRNP IEA
Inferred from Electronic Annotation
more info
  
part_of U4 snRNP IEA
Inferred from Electronic Annotation
more info
  
part_of U5 snRNP IEA
Inferred from Electronic Annotation
more info
  
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
  
part_of commitment complex IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
part_of pICln-Sm protein complex IEA
Inferred from Electronic Annotation
more info
  
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
  
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
  
part_of spliceosomal tri-snRNP complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
small nuclear ribonucleoprotein Sm D1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054382.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    55149396..55164958
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018269372.2 → XP_018124861.1  small nuclear ribonucleoprotein Sm D1 isoform X2

    UniProtKB/TrEMBL
    A0A8J0VM00

  2. XM_018269371.2 → XP_018124860.1  small nuclear ribonucleoprotein Sm D1 isoform X1

    UniProtKB/TrEMBL
    A0A974CJA1, Q6GR62
    Related
    ENSXLAP00005006093.1, ENSXLAT00005006199.1
    Conserved Domains (1) summary
    cd01724
    Location:2 → 93
    Sm_D1; Sm protein D1
Nucleotide Protein Strain
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