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phf5a.S PHD finger protein 5A S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 108715776, updated on 4-Nov-2024

Summary

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Official Symbol
phf5a.S
Official Full Name
PHD finger protein 5A S homeolog
Primary source
Xenbase:XB-GENE-17336121
Locus tag
XELAEV_18025668mg
See related
EnsemblRapid:ENSXLAG00005005747 AllianceGenome:Xenbase:XB-GENE-17336121
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Summary
Predicted to act upstream of or within mRNA splicing, via spliceosome. Predicted to be part of U2 snRNP and spliceosomal complex. Orthologous to human PHF5A (PHD finger protein 5A). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See phf5a.S in Genome Data Viewer
Location:
chromosome: 4S
Exon count:
5
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 4S NC_054378.1 (100626761..100633856, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 4S NC_030731.1 (94304629..94311822, complement)

Chromosome 4S - NC_054378.1Genomic Context describing neighboring genes Neighboring gene GTP binding protein 1 S homeolog Neighboring gene transducer of ERBB2, 2 S homeolog Neighboring gene aconitase 2 S homeolog Neighboring gene WBP2 N-terminal like S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
acts_upstream_of_or_within mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of U12-type spliceosomal complex IEA
Inferred from Electronic Annotation
more info
  
part_of U2 snRNP IEA
Inferred from Electronic Annotation
more info
  
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
  
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
PHD finger-like domain-containing protein 5A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054378.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    100626761..100633856 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018261232.2 → XP_018116721.1  PHD finger-like domain-containing protein 5A isoform X1

    UniProtKB/TrEMBL
    A0A974HPB0, Q5I000
    Related
    ENSXLAP00005017099.1, ENSXLAT00005017396.1
    Conserved Domains (1) summary
    pfam03660
    Location:1 → 104
    PHF5; PHF5-like protein

  2. XM_018261233.2 → XP_018116722.1  PHD finger-like domain-containing protein 5A isoform X2

    UniProtKB/TrEMBL
    A0A8J0V892
    Related
    ENSXLAP00005017106.1, ENSXLAT00005017402.1
Nucleotide Protein Strain
Heading Accession and Version

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