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chst6.S carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 6 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 108715440, updated on 4-Nov-2024

Summary

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Official Symbol
chst6.S
Official Full Name
carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 6 S homeolog
Primary source
Xenbase:XB-GENE-17336875
Locus tag
XELAEV_18024943mg
See related
EnsemblRapid:ENSXLAG00005010361 AllianceGenome:Xenbase:XB-GENE-17336875
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
mcdc1; chst5.1
Summary
Human ortholog(s) of this gene implicated in macular corneal dystrophy. Orthologous to human CHST6 (carbohydrate sulfotransferase 6). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See chst6.S in Genome Data Viewer
Location:
chromosome: 4S
Exon count:
2
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 4S NC_054378.1 (45892814..45909495, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 4S NC_030731.1 (44491337..44508318, complement)

Chromosome 4S - NC_054378.1Genomic Context describing neighboring genes Neighboring gene M-phase phosphoprotein 6 Neighboring gene estradiol 17-beta-dehydrogenase 2-like Neighboring gene transmembrane protein 231 S homeolog Neighboring gene GABA(A) receptor-associated protein like 2 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
carbohydrate sulfotransferase 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054378.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    45892814..45909495 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041561187.1 → XP_041417121.1  carbohydrate sulfotransferase 5

    UniProtKB/TrEMBL
    A0A1L8GEY9, A0A974HLV7
    Related
    ENSXLAP00005030566.1, ENSXLAT00005031323.1
    Conserved Domains (1) summary
    pfam13469
    Location:44 → 296
    Sulfotransfer_3; Sulfotransferase family
Nucleotide Protein Strain
Heading Accession and Version

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