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chst1.S carbohydrate (keratan sulfate Gal-6) sulfotransferase 1 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 108715239, updated on 4-Nov-2024

Summary

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Official Symbol
chst1.S
Official Full Name
carbohydrate (keratan sulfate Gal-6) sulfotransferase 1 S homeolog
Primary source
Xenbase:XB-GENE-17343990
Locus tag
XELAEV_18024464mg
See related
EnsemblRapid:ENSXLAG00005022263 AllianceGenome:Xenbase:XB-GENE-17343990
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
c6st; ks6st; ksgal6st
Summary
Predicted to enable N-acetylglucosamine 6-O-sulfotransferase activity and keratan sulfotransferase activity. Predicted to act upstream of or within N-acetylglucosamine metabolic process; carbohydrate metabolic process; and keratan sulfate metabolic process. Predicted to be located in Golgi membrane and trans-Golgi network. Orthologous to human CHST1 (carbohydrate sulfotransferase 1). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See chst1.S in Genome Data Viewer
Location:
chromosome: 4S
Exon count:
3
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 4S NC_054378.1 (13988326..14013781, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 4S NC_030731.1 (13386201..13411670, complement)

Chromosome 4S - NC_054378.1Genomic Context describing neighboring genes Neighboring gene astacin-like metallo-endopeptidase 2 gene a S homeolog Neighboring gene serine/threonine-protein kinase 4-like Neighboring gene traf2 and NCK-interacting protein kinase-like Neighboring gene solute carrier family 35 member C1 S homeolog Neighboring gene cryptochrome circadian regulator 2 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables N-acetylglucosamine 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables keratan sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within N-acetylglucosamine metabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within keratan sulfate metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
carbohydrate sulfotransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054378.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    13988326..14013781 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018260203.2 → XP_018115692.1  carbohydrate sulfotransferase 1

    UniProtKB/TrEMBL
    A0A1L8GE20, A0A974D0I7
    Related
    ENSXLAP00005065467.1, ENSXLAT00005066983.1
Nucleotide Protein Strain
Heading Accession and Version

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