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LOC108715060 brain-derived neurotrophic factor [ Xenopus laevis (African clawed frog) ]

Gene ID: 108715060, updated on 18-Aug-2023

Summary

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Gene symbol
LOC108715060
Gene description
brain-derived neurotrophic factor
Locus tag
XELAEV_18024383mg
See related
EnsemblRapid:ENSXLAG00005006450
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
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Genomic context

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See LOC108715060 in Genome Data Viewer
Location:
chromosome: 4S
Exon count:
3
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 4S NC_054378.1 (8494380..8558438, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 4S NC_030731.1 (8332082..8333383, complement)

Chromosome 4S - NC_054378.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 34 S homeolog Neighboring gene leucine-rich repeat containing G protein-coupled receptor 4 S homeolog Neighboring gene uncharacterized LOC121393170 Neighboring gene methyltransferase 15, mitochondrial 12S rRNA N4-cytidine S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
brain-derived neurotrophic factor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054378.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    8494380..8558438 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041560895.1 → XP_041416829.1  brain-derived neurotrophic factor isoform X1

    UniProtKB/TrEMBL
    A0A8J1KKR2, F4ZGF6
    Conserved Domains (1) summary
    smart00140
    Location:141 → 248
    NGF; Nerve growth factor (NGF or beta-NGF)

  2. XM_018259909.2 → XP_018115398.1  brain-derived neurotrophic factor isoform X2

    UniProtKB/TrEMBL
    A0A1L8GDT3, A0A974CZZ3, F4ZGF6
    Related
    ENSXLAP00005019163.1, ENSXLAT00005019498.1
Nucleotide Protein Strain
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