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sec13.L SEC13 homolog, nuclear pore and COPII coat complex component L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 108714639, updated on 18-Sep-2024

Summary

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Official Symbol
sec13.L
Official Full Name
SEC13 homolog, nuclear pore and COPII coat complex component L homeolog
Primary source
Xenbase:XB-GENE-17341050
See related
EnsemblRapid:ENSXLAG00005035543
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
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Genomic context

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See sec13.L in Genome Data Viewer
Location:
chromosome: 4L
Exon count:
9
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 4L NC_054377.1 (131260666..131270245, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 4L NC_030730.1 (126017810..126027501, complement)

Chromosome 4L - NC_054377.1Genomic Context describing neighboring genes Neighboring gene ghrelin L homeolog Neighboring gene uncharacterized LOC108714638 Neighboring gene cullin-associated and neddylation-dissociated 2 (putative) L homeolog Neighboring gene ribosomal protein L32 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within COPII-coated vesicle budding IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within mRNA transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within positive regulation of TOR signaling IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein exit from endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein import into nucleus IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of COPII vesicle coat IEA
Inferred from Electronic Annotation
more info
  
located_in lysosomal membrane IEA
Inferred from Electronic Annotation
more info
  
located_in lysosome IEA
Inferred from Electronic Annotation
more info
  
part_of nuclear pore IEA
Inferred from Electronic Annotation
more info
  
part_of nuclear pore outer ring IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
protein SEC13 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054377.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    131260666..131270245 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018259042.2 → XP_018114531.1  protein SEC13 homolog

    UniProtKB/TrEMBL
    Q6GNX0
    Related
    ENSXLAP00005106251.1, ENSXLAT00005108333.1
Nucleotide Protein Strain
Heading Accession and Version

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