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skp1.S S-phase kinase-associated protein 1 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 108712619, updated on 18-Sep-2024

Summary

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Official Symbol
skp1.S
Official Full Name
S-phase kinase-associated protein 1 S homeolog
Primary source
Xenbase:XB-GENE-17344373
Locus tag
XELAEV_18019996mg
See related
EnsemblRapid:ENSXLAG00005019466
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
skp1a
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Genomic context

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See skp1.S in Genome Data Viewer
Location:
chromosome: 3S
Exon count:
7
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3S NC_054376.1 (12813047..12824449)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 3S NC_030729.1 (12591060..12602546)

Chromosome 3S - NC_054376.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121402111 Neighboring gene protein phosphatase 2 catalytic subunit alpha S homeolog Neighboring gene transcription factor 7 S homeolog Neighboring gene voltage-dependent anion channel 1 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Emi1 is a mitotic regulator that interacts with Cdc20 and inhibits the anaphase promoting complex. Reimann JD, et al. Cell, 2001 Jun 1. PMID 11389834
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables cullin family protein binding IEA
Inferred from Electronic Annotation
more info
  
enables kinase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within SCF-dependent proteasomal ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within phosphorylation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein ubiquitination IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of SCF ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
S-phase kinase-associated protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054376.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    12813047..12824449
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018254913.2 → XP_018110402.1  S-phase kinase-associated protein 1 isoform X2

    UniProtKB/Swiss-Prot
    Q71U00
    UniProtKB/TrEMBL
    A0A974D604
    Related
    ENSXLAP00005057145.1, ENSXLAT00005058492.1
    Conserved Domains (2) summary
    cd18322
    Location:4 → 127
    BTB_POZ_SKP1; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in S-phase kinase-associated protein 1 (SKP1) and similar proteins
    pfam01466
    Location:113 → 160
    Skp1; Skp1 family, dimerization domain

  2. XM_018254912.2 → XP_018110401.1  S-phase kinase-associated protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8J0UZ41
Nucleotide Protein Strain
Heading Accession and Version

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