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sgcd.S sarcoglycan delta S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 108712261, updated on 4-Nov-2024

Summary

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Official Symbol
sgcd.S
Official Full Name
sarcoglycan delta S homeolog
Primary source
Xenbase:XB-GENE-6488435
Locus tag
XELAEV_18019911mg
See related
AllianceGenome:Xenbase:XB-GENE-6488435
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
sgd; dagd; 35dag; cmd1l; sgcdp; sg-delta
Summary
Human ortholog(s) of this gene implicated in autosomal recessive limb-girdle muscular dystrophy type 2F; dilated cardiomyopathy 1L; and muscular dystrophy. Orthologous to human SGCD (sarcoglycan delta). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See sgcd.S in Genome Data Viewer
Location:
chromosome: 3S
Exon count:
6
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3S NC_054376.1 (7881096..7913577)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 3S NC_030729.1 (7913454..7934570)

Chromosome 3S - NC_054376.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 69 S homeolog Neighboring gene uncharacterized LOC121402098 Neighboring gene uncharacterized LOC121402099 Neighboring gene hepatitis A virus cellular receptor 1 S homeolog Neighboring gene caldesmon 1 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
delta-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054376.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    7881096..7913577
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041587971.1 → XP_041443905.1  delta-sarcoglycan

    UniProtKB/TrEMBL
    A0A8J1MSB2
Nucleotide Protein Strain
Heading Accession and Version

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