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hoxc6.L homeobox C6 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 108708639, updated on 4-Nov-2024

Summary

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Official Symbol
hoxc6.L
Official Full Name
homeobox C6 L homeolog
Primary source
Xenbase:XB-GENE-17337706
Locus tag
XELAEV_18013563mg
See related
AllianceGenome:Xenbase:XB-GENE-17337706
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
ACI; xeb1; XlHbox1
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to act upstream of or within anterior/posterior pattern specification and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Is expressed in musculoskeletal system and nervous system. Orthologous to human HOXC6 (homeobox C6). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See hoxc6.L in Genome Data Viewer
Location:
chromosome: 2L
Exon count:
2
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2L NC_054373.1 (154201772..154210331, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2L NC_030726.1 (148287064..148292281, complement)

Chromosome 2L - NC_054373.1Genomic Context describing neighboring genes Neighboring gene homeobox C3 L homeolog Neighboring gene homeobox C4 L homeolog Neighboring gene homeobox C5 L homeolog Neighboring gene homeobox protein pXhoxc8 Neighboring gene homeobox C9 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within anterior/posterior pattern specification IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
homeobox protein Hox-C6-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054373.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    154201772..154210331 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018247557.2 → XP_018103046.1  homeobox protein Hox-C6-like isoform X1

    UniProtKB/TrEMBL
    A0A1L8HIF0, A0A974DPW9, Q52KV7

  2. XM_018247558.2 → XP_018103047.1  homeobox protein Hox-C6-like isoform X2

    UniProtKB/TrEMBL
    A0A1L8HIE1, A0A974DQ52, Q52KV7
Nucleotide Protein Strain
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