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efna5.S ephrin A5 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 108707220, updated on 18-Sep-2024

Summary

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Official Symbol
efna5.S
Official Full Name
ephrin A5 S homeolog
Primary source
Xenbase:XB-GENE-17335327
Locus tag
XELAEV_18010787mg
See related
EnsemblRapid:ENSXLAG00005006393
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
efl5; rags; eplg7; glc1m; lerk7; ephrin-A5
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Genomic context

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See efna5.S in Genome Data Viewer
Location:
chromosome: 1S
Exon count:
5
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1S NC_054372.1 (162835136..163121863)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1S NC_030725.1 (146827437..147114778)

Chromosome 1S - NC_054372.1Genomic Context describing neighboring genes Neighboring gene praja ring finger 2, E3 ubiquitin protein ligase S homeolog Neighboring gene fer (fps/fes related) tyrosine kinase S homeolog Neighboring gene uncharacterized LOC121399121 Neighboring gene uncharacterized LOC121399505 Neighboring gene nudix hydrolase 12 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables ephrin receptor binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within axon guidance IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within cell differentiation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within ephrin receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within nervous system development IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of actin cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  
located_in side of membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
ephrin-A5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054372.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    162835136..163121863
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041580446.1 → XP_041436380.1  ephrin-A5 isoform X2

    UniProtKB/TrEMBL
    A0A8J1M5Q3
    Conserved Domains (1) summary
    cd10425
    Location:31 → 160
    Ephrin-A_Ectodomain; Ectodomain of Ephrin A

  2. XM_018244333.2 → XP_018099822.1  ephrin-A5 isoform X1

    UniProtKB/TrEMBL
    A0A8J0UD92, A0A974DW22
    Related
    ENSXLAP00005018978.1, ENSXLAT00005019313.1
Nucleotide Protein Strain
Heading Accession and Version

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