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galntl6.S polypeptide N-acetylgalactosaminyltransferase like 6 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 108706630, updated on 4-Nov-2024

Summary

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Official Symbol
galntl6.S
Official Full Name
polypeptide N-acetylgalactosaminyltransferase like 6 S homeolog
Primary source
Xenbase:XB-GENE-17330061
Locus tag
XELAEV_18009161mg
See related
EnsemblRapid:ENSXLAG00005001152 AllianceGenome:Xenbase:XB-GENE-17330061
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
galnt17
Summary
Orthologous to human GALNTL6 (polypeptide N-acetylgalactosaminyltransferase like 6). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See galntl6.S in Genome Data Viewer
Location:
chromosome: 1S
Exon count:
12
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1S NC_054372.1 (38003006..38581933, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1S NC_030725.1 (37820330..37948109, complement)

Chromosome 1S - NC_054372.1Genomic Context describing neighboring genes Neighboring gene polypeptide N-acetylgalactosaminyltransferase 7 S homeolog Neighboring gene high mobility group box 2 S homeolog Neighboring gene uncharacterized LOC121399286 Neighboring gene aminoadipate aminotransferase S homeolog Neighboring gene microfibril associated protein 3 like S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase-like 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054372.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    38003006..38581933 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018243208.2 → XP_018098697.2  polypeptide N-acetylgalactosaminyltransferase-like 6

    UniProtKB/TrEMBL
    A0A8J0U8H2
    Related
    ENSXLAP00005003493.1, ENSXLAT00005003555.1
    Conserved Domains (2) summary
    cd02510
    Location:142 → 437
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    smart00458
    Location:457 → 584
    RICIN; Ricin-type beta-trefoil
Nucleotide Protein Strain
Heading Accession and Version

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