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st3gal5.S ST3 beta-galactoside alpha-2,3-sialyltransferase 5 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 108706512, updated on 4-Nov-2024

Summary

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Official Symbol
st3gal5.S
Official Full Name
ST3 beta-galactoside alpha-2,3-sialyltransferase 5 S homeolog
Primary source
Xenbase:XB-GENE-17345695
Locus tag
XELAEV_18008847mg
See related
EnsemblRapid:ENSXLAG00005000840 AllianceGenome:Xenbase:XB-GENE-17345695
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Summary
Predicted to enable lactosylceramide alpha-2,3-sialyltransferase activity. Predicted to act upstream of or within protein glycosylation. Predicted to be located in Golgi membrane. Human ortholog(s) of this gene implicated in salt and pepper syndrome. Orthologous to human ST3GAL5 (ST3 beta-galactoside alpha-2,3-sialyltransferase 5). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See st3gal5.S in Genome Data Viewer
Location:
chromosome: 1S
Exon count:
9
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1S NC_054372.1 (9887062..9924406)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1S NC_030725.1 (9772163..9810416)

Chromosome 1S - NC_054372.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORD94 Neighboring gene inner membrane protein, mitochondrial S homeolog Neighboring gene atonal bHLH transcription factor 8 S homeolog Neighboring gene fibroblast growth factor receptor like 1 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables lactosylceramide alpha-2,3-sialyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables sialyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within protein glycosylation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
  
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
lactosylceramide alpha-2,3-sialyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054372.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    9887062..9924406
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018243000.2 → XP_018098489.1  lactosylceramide alpha-2,3-sialyltransferase

    UniProtKB/TrEMBL
    A0A1L8HKN9, A0A974DRJ0
    Related
    ENSXLAP00005002500.1, ENSXLAT00005002546.1
    Conserved Domains (1) summary
    pfam00777
    Location:96 → 361
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  2. XM_041579370.1 → XP_041435304.1  lactosylceramide alpha-2,3-sialyltransferase

    UniProtKB/TrEMBL
    A0A1L8HKN9, A0A974DRJ0
    Conserved Domains (1) summary
    pfam00777
    Location:96 → 361
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)
Nucleotide Protein Strain
Heading Accession and Version

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