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cacna2d4.L calcium channel, voltage-dependent, alpha 2/delta subunit 4 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 108704584, updated on 11-Apr-2024

Summary

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Official Symbol
cacna2d4.L
Official Full Name
calcium channel, voltage-dependent, alpha 2/delta subunit 4 L homeolog
Primary source
Xenbase:XB-GENE-6486776
Locus tag
XELAEV_18003010mg
See related
EnsemblRapid:ENSXLAG00005027133
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
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Genomic context

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See cacna2d4.L in Genome Data Viewer
Location:
chromosome: 3L
Exon count:
41
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3L NC_054375.1 (13654226..13760360, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) Unplaced Scaffold NW_016694830.1 (1620371..1727234)

Chromosome 3L - NC_054375.1Genomic Context describing neighboring genes Neighboring gene interleukin-17 receptor A-like Neighboring gene adiponectin receptor 2 L homeolog Neighboring gene leucine-rich repeats and transmembrane domains 2 L homeolog Neighboring gene decapping mRNA 1B L homeolog Neighboring gene calcium channel, voltage-dependent, L type, alpha 1C subunit L homeolog Neighboring gene uncharacterized LOC121401378

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables calcium channel activity IEA
Inferred from Electronic Annotation
more info
  
enables voltage-gated calcium channel activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within calcium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
part_of monoatomic ion channel complex IEA
Inferred from Electronic Annotation
more info
  
part_of voltage-gated calcium channel complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
voltage-dependent calcium channel subunit alpha-2/delta-4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054375.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    13654226..13760360 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041585924.1 → XP_041441858.1  voltage-dependent calcium channel subunit alpha-2/delta-4 isoform X3

    UniProtKB/TrEMBL
    A0A8J1MK44
    Conserved Domains (3) summary
    cd01463
    Location:226 → 409
    vWA_VGCC_like; VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at ...
    cd12912
    Location:494 → 609
    PDC2_MCP_like; second PDC (PhoQ/DcuS/CitA) domain of methyl-accepting chemotaxis proteins and similar domains
    cl38916
    Location:433 → 492
    HK_sensor; Sensor domains of Histidine Kinase receptors

  2. XM_018241177.2 → XP_018096666.1  voltage-dependent calcium channel subunit alpha-2/delta-4 isoform X5

    UniProtKB/TrEMBL
    A0A8J0U4Z7
    Related
    ENSXLAP00005081449.1, ENSXLAT00005083060.1

  3. XM_041585923.1 → XP_041441857.1  voltage-dependent calcium channel subunit alpha-2/delta-4 isoform X2

    UniProtKB/TrEMBL
    A0A8J1MJE0
    Conserved Domains (5) summary
    cd01463
    Location:226 → 409
    vWA_VGCC_like; VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at ...
    cd12912
    Location:488 → 603
    PDC2_MCP_like; second PDC (PhoQ/DcuS/CitA) domain of methyl-accepting chemotaxis proteins and similar domains
    cl38916
    Location:433 → 486
    HK_sensor; Sensor domains of Histidine Kinase receptors
    pfam08399
    Location:97 → 213
    VWA_N; VWA N-terminal
    pfam08473
    Location:818 → 1089
    VGCC_alpha2; Neuronal voltage-dependent calcium channel alpha 2acd

  4. XM_041585925.1 → XP_041441859.1  voltage-dependent calcium channel subunit alpha-2/delta-4 isoform X4

    UniProtKB/TrEMBL
    A0A8J1MJC7
    Related
    ENSXLAP00005081184.1, ENSXLAT00005082796.1
    Conserved Domains (3) summary
    cd01463
    Location:226 → 409
    vWA_VGCC_like; VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at ...
    cd12912
    Location:494 → 609
    PDC2_MCP_like; second PDC (PhoQ/DcuS/CitA) domain of methyl-accepting chemotaxis proteins and similar domains
    cl38916
    Location:433 → 492
    HK_sensor; Sensor domains of Histidine Kinase receptors

  5. XM_041585922.1 → XP_041441856.1  voltage-dependent calcium channel subunit alpha-2/delta-4 isoform X1

    UniProtKB/TrEMBL
    A0A8J1MKD1
    Conserved Domains (3) summary
    cd01463
    Location:226 → 409
    vWA_VGCC_like; VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at ...
    cd12912
    Location:494 → 609
    PDC2_MCP_like; second PDC (PhoQ/DcuS/CitA) domain of methyl-accepting chemotaxis proteins and similar domains
    cl38916
    Location:433 → 492
    HK_sensor; Sensor domains of Histidine Kinase receptors
Nucleotide Protein Strain
Heading Accession and Version

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