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LOC108703759 E3 ubiquitin/ISG15 ligase TRIM25 [ Xenopus laevis (African clawed frog) ]

Gene ID: 108703759, updated on 18-Aug-2023

Summary

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Gene symbol
LOC108703759
Gene description
E3 ubiquitin/ISG15 ligase TRIM25
Locus tag
XELAEV_18001442mg
See related
EnsemblRapid:ENSXLAG00005020731
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
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Genomic context

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Location:
chromosome: 9_10L
Exon count:
4
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10L NC_054387.1 (134027187..134044543)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) Unplaced Scaffold NW_016694813.1 (2097470..2098711, complement)

Chromosome 9_10L - NC_054387.1Genomic Context describing neighboring genes Neighboring gene protein FAM135A-like Neighboring gene protein FAM135A Neighboring gene gastrula zinc finger protein XlCGF53.1-like Neighboring gene oocyte zinc finger protein XlCOF6.1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
E3 ubiquitin/ISG15 ligase TRIM25

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054387.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    134027187..134044543
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041576587.1 → XP_041432521.1  E3 ubiquitin/ISG15 ligase TRIM25 isoform X2

    UniProtKB/TrEMBL
    A0A8J1LU08, Q566H7
    Conserved Domains (5) summary
    smart00502
    Location:196 → 317
    BBC; B-Box C-terminal domain
    cd12891
    Location:362 → 527
    SPRY_PRY_C-I_2; PRY/SPRY domain in tripartite motif-containing (TRIM) proteins, including TRIM14-like, TRIM16-like, TRIM25-like, TRIM47-like, TRIM65 and RNF135, and stonustoxin
    cd19769
    Location:151 → 197
    Bbox2_TRIM16-like; B-box-type 2 zinc finger found in tripartite motif-containing proteins, TRIM16, TRIM29, TRIM47 and similar proteins
    cl00034
    Location:104 → 144
    Bbox_SF; B-box-type zinc finger superfamily
    cl17238
    Location:23 → 69
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  2. XM_041576588.1 → XP_041432522.1  E3 ubiquitin/ISG15 ligase TRIM25 isoform X3

    UniProtKB/TrEMBL
    A0A8J1LSL1, Q566H7
    Conserved Domains (5) summary
    smart00502
    Location:196 → 317
    BBC; B-Box C-terminal domain
    cd12891
    Location:362 → 527
    SPRY_PRY_C-I_2; PRY/SPRY domain in tripartite motif-containing (TRIM) proteins, including TRIM14-like, TRIM16-like, TRIM25-like, TRIM47-like, TRIM65 and RNF135, and stonustoxin
    cd19769
    Location:151 → 197
    Bbox2_TRIM16-like; B-box-type 2 zinc finger found in tripartite motif-containing proteins, TRIM16, TRIM29, TRIM47 and similar proteins
    cl00034
    Location:104 → 144
    Bbox_SF; B-box-type zinc finger superfamily
    cl17238
    Location:23 → 69
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  3. XM_041576586.1 → XP_041432520.1  E3 ubiquitin/ISG15 ligase TRIM25 isoform X1

    UniProtKB/TrEMBL
    A0A8J1LUW8, Q3KPM0
    Related
    ENSXLAP00005060814.1, ENSXLAT00005062267.1
    Conserved Domains (5) summary
    smart00502
    Location:196 → 317
    BBC; B-Box C-terminal domain
    cd12891
    Location:362 → 527
    SPRY_PRY_C-I_2; PRY/SPRY domain in tripartite motif-containing (TRIM) proteins, including TRIM14-like, TRIM16-like, TRIM25-like, TRIM47-like, TRIM65 and RNF135, and stonustoxin
    cd19769
    Location:151 → 197
    Bbox2_TRIM16-like; B-box-type 2 zinc finger found in tripartite motif-containing proteins, TRIM16, TRIM29, TRIM47 and similar proteins
    cl00034
    Location:104 → 144
    Bbox_SF; B-box-type zinc finger superfamily
    cl17238
    Location:23 → 69
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
Nucleotide Protein Strain
Heading Accession and Version

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