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b4galt5.S UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 108702589, updated on 4-Nov-2024

Summary

Official Symbol
b4galt5.S
Official Full Name
UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5 S homeolog
Primary source
Xenbase:XB-GENE-17337339
Locus tag
XELAEV_18046159mg
See related
EnsemblRapid:ENSXLAG00005036637 AllianceGenome:Xenbase:XB-GENE-17337339
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Summary
Predicted to enable UDP-galactose:glucosylceramide beta-1,4-galactosyltransferase activity and metal ion binding activity. Predicted to act upstream of or within carbohydrate metabolic process and protein glycosylation. Predicted to be located in Golgi cisterna membrane and Golgi membrane. Orthologous to human B4GALT5 (beta-1,4-galactosyltransferase 5). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

See b4galt5.S in Genome Data Viewer
Location:
chromosome: 9_10S
Exon count:
10
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10S NC_054388.1 (9132550..9166604, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10S NC_030741.1 (9011192..9061154, complement)

Chromosome 9_10S - NC_054388.1Genomic Context describing neighboring genes Neighboring gene sulfatase 2 S homeolog Neighboring gene phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1 S homeolog Neighboring gene solute carrier family 9 member 8 S homeolog Neighboring gene plasmanylethanolamine desaturase

Genomic regions, transcripts, and products

General gene information

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables UDP-galactose:glucosylceramide beta-1,4-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within glycosylation IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within protein glycosylation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
beta-1,4-galactosyltransferase 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054388.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    9132550..9166604 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018238159.2XP_018093648.1  beta-1,4-galactosyltransferase 5

    UniProtKB/TrEMBL
    A0A1L8ELE7, A0A974BT43, A0A974BX07
    Related
    ENSXLAP00005109743.1, ENSXLAT00005111945.1

RNA

  1. XR_005964820.1 RNA Sequence