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degs3.S degenerative spermatocyte homolog 3, lipid desaturase S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 108700206, updated on 4-Nov-2024

Summary

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Official Symbol
degs3.S
Official Full Name
degenerative spermatocyte homolog 3, lipid desaturase S homeolog
Primary source
Xenbase:XB-GENE-17340655
Locus tag
XELAEV_18042386mg
See related
EnsemblRapid:ENSXLAG00005010066 AllianceGenome:Xenbase:XB-GENE-17340655
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Summary
Predicted to enable sphingolipid delta-4 desaturase activity. Predicted to act upstream of or within ceramide biosynthetic process and sphinganine metabolic process. Predicted to be located in endoplasmic reticulum membrane. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See degs3.S in Genome Data Viewer
Location:
chromosome: 8S
Exon count:
4
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 8S NC_054386.1 (79825604..79841855)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 8S NC_030739.1 (77443057..77459301)

Chromosome 8S - NC_054386.1Genomic Context describing neighboring genes Neighboring gene NTPase KAP family P-loop domain containing 1 S homeolog Neighboring gene tubulin folding cofactor B S homeolog Neighboring gene polymerase (RNA) II subunit I S homeolog Neighboring gene exonuclease 1 S homeolog Neighboring gene uncharacterized LOC108700207

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
  
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
  
enables sphingolipid delta-4 desaturase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within lipid metabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within sphinganine metabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within sphingolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
  
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
sphingolipid delta(4)-desaturase/C4-monooxygenase DES2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054386.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    79825604..79841855
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018233178.2 → XP_018088667.1  sphingolipid delta(4)-desaturase/C4-monooxygenase DES2

    UniProtKB/TrEMBL
    A0A8J0TH86
    Related
    ENSXLAP00005029657.1, ENSXLAT00005030403.1
Nucleotide Protein Strain
Heading Accession and Version

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