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chst9l.3.L carbohydrate sulfotransferase 9-like gene 3 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 108699202, updated on 4-Nov-2024

Summary

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Official Symbol
chst9l.3.L
Official Full Name
carbohydrate sulfotransferase 9-like gene 3 L homeolog
Primary source
Xenbase:XB-GENE-22169232
Locus tag
XELAEV_18039921mg
See related
AllianceGenome:Xenbase:XB-GENE-22169232
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Summary
Predicted to enable sulfotransferase activity. Predicted to act upstream of or within carbohydrate biosynthetic process and proteoglycan biosynthetic process. Predicted to be located in Golgi membrane. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See chst9l.3.L in Genome Data Viewer
Location:
chromosome: 8L
Exon count:
5
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 8L NC_054385.1 (100043785..100053201)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 8L NC_030738.1 (85361596..85369615)

Chromosome 8L - NC_054385.1Genomic Context describing neighboring genes Neighboring gene farnesyltransferase, CAAX box, subunit beta L homeolog Neighboring gene RAB15, member RAS oncogene family L homeolog Neighboring gene carbohydrate sulfotransferase 9-like gene 2 L homeolog Neighboring gene inositol-trisphosphate 3-kinase A L homeolog Neighboring gene uncharacterized LOC121397141 Neighboring gene zinc finger protein 106 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within carbohydrate biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
  
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
carbohydrate sulfotransferase 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054385.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    100043785..100053201
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041573307.1 → XP_041429241.1  carbohydrate sulfotransferase 9 isoform X1

    UniProtKB/TrEMBL
    A0A8J1LIU2
    Conserved Domains (1) summary
    pfam03567
    Location:73 → 297
    Sulfotransfer_2; Sulfotransferase family

  2. XM_018231120.2 → XP_018086609.1  carbohydrate sulfotransferase 9 isoform X2

    UniProtKB/TrEMBL
    A0A1L8FAL7, A0A974C8H7

  3. XM_018231119.2 → XP_018086608.1  carbohydrate sulfotransferase 9 isoform X2

    UniProtKB/TrEMBL
    A0A1L8FAL7, A0A974C8H7

  4. XM_041573308.1 → XP_041429242.1  carbohydrate sulfotransferase 9 isoform X3

    UniProtKB/TrEMBL
    A0A8J0TJF3
    Conserved Domains (1) summary
    pfam03567
    Location:48 → 272
    Sulfotransfer_2; Sulfotransferase family

  5. XM_018231117.2 → XP_018086606.1  carbohydrate sulfotransferase 9 isoform X1

    UniProtKB/TrEMBL
    A0A8J1LIU2
    Conserved Domains (1) summary
    pfam03567
    Location:73 → 297
    Sulfotransfer_2; Sulfotransferase family

  6. XM_018231121.2 → XP_018086610.1  carbohydrate sulfotransferase 9 isoform X3

    UniProtKB/TrEMBL
    A0A8J0TJF3
    Conserved Domains (1) summary
    pfam03567
    Location:48 → 272
    Sulfotransfer_2; Sulfotransferase family

  7. XM_018231122.2 → XP_018086611.1  carbohydrate sulfotransferase 9 isoform X4

    UniProtKB/TrEMBL
    A0A8J0TD65
Nucleotide Protein Strain
Heading Accession and Version

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