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alg13.L ALG13 UDP-N-acetylglucosaminyltransferase subunit L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 108698403, updated on 4-Nov-2024

Summary

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Official Symbol
alg13.L
Official Full Name
ALG13 UDP-N-acetylglucosaminyltransferase subunit L homeolog
Primary source
Xenbase:XB-GENE-22172433
Locus tag
XELAEV_18038810mg
See related
EnsemblRapid:ENSXLAG00005011085 AllianceGenome:Xenbase:XB-GENE-22172433
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
otud4
Summary
Predicted to enable cysteine-type deubiquitinase activity and transferase activity. Predicted to act upstream of or within protein deubiquitination. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 36. Orthologous to human ALG13 (ALG13 UDP-N-acetylglucosaminyltransferase subunit). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See alg13.L in Genome Data Viewer
Location:
chromosome: 8L
Exon count:
26
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 8L NC_054385.1 (43222193..43276966)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 8L NC_030738.1 (30055807..30110909)

Chromosome 8L - NC_054385.1Genomic Context describing neighboring genes Neighboring gene doublecortin L homeolog Neighboring gene serine-rich and transmembrane domain-containing 2 Neighboring gene transient receptor potential cation channel, subfamily C, member 5 L homeolog Neighboring gene uncharacterized LOC108698406 Neighboring gene LHFPL tetraspan subfamily member 1 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
  
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within protein deubiquitination IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054385.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    43222193..43276966
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041572747.1 → XP_041428681.1  putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 isoform X2

    UniProtKB/TrEMBL
    A0A8J1LH36

  2. XM_018229861.2 → XP_018085350.1  putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 isoform X1

    UniProtKB/TrEMBL
    A0A1L8F7F0, A0A974C6W3
    Related
    ENSXLAP00005032591.1, ENSXLAT00005033382.1
Nucleotide Protein Strain
Heading Accession and Version

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